Yes. Accuracy and group size will be better if sorted and shot by headstamp though.
Also, as a rule 5.56 is usually slightly thicker/heavier. Thus slightly less internal capacity. When loading to MAX, you should work up loads separately as pressure may climb beyond acceptable levels as much as a grain sooner in mil spec brass. Then again, this holds true to a lesser extent with different commercial brass also. I. E. Win vs. Rem vs. Fed. etc.
Bob
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Much discussion of which 9mm will expand, and how much. But for sure a 45 WILL NOT SHRINK!